Custom AI Image Analysis for Microscopy Workflows

SnapCyte™ offers tailored deep learning solutions to help researchers, biotech teams, and CROs extract more from their microscopy data. Whether you’re analyzing cell morphology, spheroid growth, or multi-channel fluorescence, we help you automate and scale microscopy image analysis without needing in-house AI resources.

step-by-step process for deploying AI image analysis tools

How it works

How Custom AI Image Analysis for Microscopy Works

Share Your Data & Goals

Send us sample images and a brief description of what you want to analyze—cell count, viability, morphology, 3D structures, etc.

Our team works with you to define the right metrics, model requirements, and deliverables—tailored to your workflow and sample type.

We train, test, and fine-tune an AI model on your data, ensuring reliable output with real-world variability in mind.

Once the model is validated, you can choose how to use it. SnapCyte™ can run the analysis and deliver the results directly, or you can access the model through our hosted platform, integrate it into your pipeline via API, or receive the code for deployment within your own infrastructure—whichever approach best fits your workflow.

Let’s Solve Your Microscopy Data Analysis Challenges

Contact us today to discuss your dataset, imaging goals, or bottlenecks. We’ll help you find the right AI solution—custom model, service-based, or hybrid.

Case studies

SnapCyte™ integration has significantly enhanced the precision and efficiency of our invasion assays, providing a solid answer compared to our previous data analysis challenge.

— Eliana Beraldi
Senior Research Assistant, Vancouver Prostate Centre

Frequently asked questions

Find your answers here or contact us

Our process begins with a consultation to understand your research needs and microscopy challenges. We then design and train AI models using curated datasets tailored to your requirements, ensuring precision and relevance to your workflows.

We use MLOps-driven infrastructure to organize and manage your data pipelines. This includes versioning, feedback loops, and scalability to ensure your AI models remain reproducible and adaptable as your research evolves.

Timelines vary depending on the complexity of your project. However, our agile approach allows us to deliver initial results quickly, typically within weeks, while continuing to refine models based on your feedback.

We provide ongoing support to ensure seamless integration into your workflows. This includes user training, regular updates, and optional enhancements to your AI models as your research progresses

Absolutely. Our team of experts collaborates with you to assess your challenges and recommend solutions that best fit your microscopy data and research needs.

Not necessarily. Our solutions are designed to integrate with standard microscopy setups and systems. We can provide recommendations if needed to optimize your imaging  workflows or systems.

Just Need a Prebuilt Model?

SnapCyte™ offers ready-to-use models for cell counting, confluency, and invasion assays—free for academic research and instantly accessible via our app.